Monte Carlo Sampling for Wave Functions Requiring (Anti)Symmetrization

(2025)

Authors:

Koyena Bose, Steven H Simon, Ajit C Balram

Cellular dynamics emerging from turbulent flows steered by active filaments

Physical Review E American Physical Society 112:4 (2025) 45411

Authors:

Mehrana R Nejad, Julia M Yeomans, Sumesh P Thampi

Abstract:

We develop a continuum theory to describe the collective dynamics of deformable epithelial cells, distinguishing the force-generating active filaments in the cells from their shape. The theory demonstrates how active flows driven by active filaments can create nematic domains and topological defects in the cell shape field. We highlight the role of the filament flow-aligning parameter, 位Q, a rheological quantity that determines the response of the filaments to velocity gradients in the active flows, and plays a significant, to date unappreciated, role in determining the pattern of extensional and compressional active flows. In a contractile cell layer, local flows are expected to align elongated cells perpendicular to the active filaments. However, with increasing 位Q, long-range correlations in the active turbulent flow field lead to extended regions where this alignment is parallel, consistent with recent experiments on confluent Madin-Darby canine kidney (MDCK) cell layers. Further, we distinguish defects in the filament director field, which contribute to the active driving, and those in the shape director field, measured in experiments, which are advected by the active flows. By considering the shape-filament orientation, we explain the unexpected motion of +1/2 defects towards their head in contractile cell layers, consistent with recent experiments on epithelial layers examining stress around shape defects.

Coarse-graining dense, deformable active particles

Physical Review Research American Physical Society (APS) 7:4 (2025) 43070

Authors:

Mehrana R Nejad, Julia M Yeomans

Abstract:

We coarse-grain a model of closely packed ellipses that can vary their aspect ratio to derive continuum equations聽for materials comprising confluent deformable particles such as epithelial cell layers. We show that contractile nearest-neighbor interactions between ellipses can lead to their elongation and nematic ordering. Adding flows resulting from active hydrodynamic stresses produced by the particles also affects the aspect ratio and can result in active turbulence. Our results, which agree well with multiphase field simulations of deformable isotropic cells, provide a bridge between models that explicitly resolve cells and continuum theories of active matter.

A simple mean field model of feature learning

(2025)

Authors:

Niclas G脙露ring, Chris Mingard, Yoonsoo Nam, Ard Louis

Long-time divergences in the nonlinear response of gapped one-dimensional many-particle systems

SciPost Physics SciPost 19:4 (2025) 086

Authors:

Michele Fava, Sarang Gopalakrishnan, Romain Vasseur, Siddharth Parameswaran, Fabian Essler

Abstract:

SciPost Journals Publication Detail SciPost Phys. 19, 086 (2025) Long-time divergences in the nonlinear response of gapped one-dimensional many-particle systems